Conference Presentations

  • Anish M.S. Shrestha: Challenges in Sequence Analysis in the Era of Big Biological Data, Invited Talk, Philippine Computing Science Congress, Manila 2019
  • Biological sequence analysis in the era of high-throughput sequencers, Bioinformatics Syposium, Philippine Genome Center, Manila 2019
  • Anish M.S. Shrestha, Martin C. Frith, Kiyoshi Asai, Hugues Richard: Jointly aligning a group of DNA reads improves accuracy of identifying large deletions, HiTSeq 2018, Chicago
  • Naruki Yoshikawa, Kiyoshi Asai, Anish M.S. Shrestha: Combining probabilistic alignments with read pair information improves accuracy of split-alignments, Poster at the 16th Asia Pacific Bioinformatics Conference, 2018, Kanagawa
  • Hideaki Noshiro, Kiyoshi Asai, Anish M.S. Shrestha: ZBDD-based representation and mining of RNA secondary structure ensemble, Poster at the 39th Annual Meeting of the Molecular Biology Society of Japan, 2016, Yokohama
  • Anish Man Singh Shrestha, Martin C. Frith, Kiyoshi Asai, Hugues Richard: A New Framework for Identifying Genomic Structural Variants Using Joint Alignment of Reads, Statistical Methods for Post Genomic Data Analysis 2016, Lille.
  • Anish Man Singh Shrestha, Martin C. Frith, Kiyoshi Asai, Hugues Richard: Identifying structural variations by jointly aligning a group of reads to a reference genome, GIW/ISCB-Asia 2014, Tokyo.
  • Anish Man Singh Shrestha and Martin C. Frith: An Approximate Bayesian Approach to Mapping Paired-End DNA Reads to a Reference Genome, ISCB-Asia/SCCG 2012, Shenzhen.
  • Satoshi Tayu, Anish Man Singh Shrestha, Shuichi Ueno: On the Complexity of Energy-Aware Mapping for NoCs, IEICE Technical Report, Niigata, Vol.111, No.465, pp.219-224, 2012
  • Anish Man Singh Shrestha, Satoshi Tayu, Shuichi Ueno: Bandwidth of Convex Bipartite Graphs and Related Graphs, 17th International Computing and Combinatorics Conference (COCOON, Dallas), Lecture Notes In Computer Science, vol. 6842, pp. 307 — 318, 2011. 

    *Extended abstract appears in the proceedings of the 7th Hungarian-Japanese Symposium on Discrete Mathematics and Its Applications, Kyoto, pp. 381 — 388, 2011.
  • Anish Man Singh Shrestha, Satoshi Tayu, Shuichi Ueno: A Necessary Condition for Orthogonal Ray Graphs, Proceedings of the 2010 IEICE General Conference, Sendai, A-1-29, 2010.
  • Anish Man Singh Shrestha, Satoshi Tayu and Shuichi Ueno. On Two-Directional Orthogonal Ray Graphs, Proceedings of the IEEE International Symposium on Circuits and Systems (ISCAS, Paris), pp.1807-1810, 2010. 

    *Extended abstract appears in the proceedings of the 7th Japan Conference on Computational Geometry and Graphs (JCCGG, Kanazawa), pp.93-94, 2009.
  • Anish Man Singh Shrestha, Satoshi Tayu, and Shuichi Ueno: Orthogonal Ray Graphs and Nano-PLA Design , Proceedings of the IEEE International Symposium on Circuits and Systems (ISCAS, Taipei), pp.2930-2933, 2009.
  • Anish Man Singh Shrestha, Satoshi Tayu, and Shuichi Ueno: On the Permutation Routing in All-Optical Caterpillar Networks; IEICE Technical Report, Niigata, Vol. 107, No. 361, pp. 23-27, 2007.[Original Manuscript contains some errors!]

Conference Organization

  • Program Committee Member, WABI 2016, 2017
  • Program Committee Member, 7th AYRCOB 2013 at CBRC, Tokyo
  • Program Committee Member, 6th AYRCOB 2012 at BGI, Shenzhen