Journal Articles – Anish MS Shrestha

Anish M.S. Shrestha, Joyce Emlyn B. Guiao , Kyle Christian R. Santiago: Assembly-free rapid differential gene expression analysis in non-model organisms using DNA-protein alignment. BMC Genomics 23, 97 (2022). Link.
Anish M.S. Shrestha, Crissa Ann I. Lilagan, Joyce Emlyn B. Guiao, Maria Rowena R. Romana-Eguia, Ma. Carmen Ablan Lagman: Comparative transcriptome profiling of heat stress response of the mangrove crab Scylla serrata across different sites. BMC Genomics 22, 580, 2021. Link.
Anish M.S. Shrestha, Naruki Yoshikawa, and Kiyoshi Asai: Combining probabilistic alignments with read pair information improves accuracy of split-alignments, Bioinformatics 2018
Martin C. Frith and Anish M.S. Shrestha: A Simplified Description of Child Tables for Sequence Similarity Search,IEEE/ACM Transactions on Computational Biology and Bioinformatics, pp(99):1-1 2018
Anish M.S. Shrestha, Martin C. Frith, Kiyoshi Asai, Hugues Richard: Jointly aligning a group of DNA reads improves accuracy of identifying large deletions, Nucleic Acids Research, 2017
Anish Man Singh Shrestha, Martin C. Frith, and Paul Horton: A Bioinformatician’s Guide to the Forefront of Suffix Array Construction Algorithms, Briefings in Bioinformatics 2014 Mar; 15(2): 138-54.
Anish Man Singh Shrestha and Martin C. Frith: An Approximate Bayesian Approach to Mapping Paired-End DNA Reads to a Reference Genome , Bioinformatics (29) 8, pp 965 – 972, 2013; doi: 10.1093/bioinformatics/btt073.
Anish Man Singh Shrestha, Satoshi Tayu, Shuichi Ueno: Bandwidth of Convex Bipartite Graphs and Related Graphs, Information Processing Letters, Vol.112, pp. 411 – 417, 2012.
Anish Man Singh Shrestha, Asahi Takaoka, Satoshi Tayu, Shuichi Ueno: On Two Problems of Nano-PLA Design ,IEICE Transaction on Information and Systems, Vol E94-D, No.1, pp 35-41, Jan 2011.
Anish Man Singh Shrestha, Satoshi Tayu, Shuichi Ueno: On Orthogonal Ray Graphs, Discrete Applied Mathematics, Vol. 158, pp. 1650-1659, 2010.